AT4G00260.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.438 plasma membrane 0.296 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transcriptional factor B3 family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
maternal effect embryo arrest 45 (MEE45); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, embryo development ending in seed dormancy; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: Transcriptional factor B3 family protein (TAIR:AT2G24645.1); Has 539 Blast hits to 263 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 539; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:114971..117051 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 60038.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.19 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.51 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 528 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAHQHFFKPL LPGFHASLTI PVAFFLKYIE GRYEQKTAKL RSDASKRTWE VKIDGQRLTD GWKEFAVSHD LRIGDIVVFR QESDLAFHVT LLGPSCCGIQ 101: YGSCSVEKNN LGDEKKKVKE NPNGEAESSS RDPSCFVANV APSSLRYDLM RFPRGFVRDN GVVGSGEIVL MNEKGRSWNF NLRQKPSNGT VYVRGGWVSF 201: CDANGLKAGD NYTFKLIKRA GTLVLRLLPN EPKEEANEVS LPEEPESDAE RNLEKIQRKE KVKKNVTREA ESSSQDPSCF VANVSPSSLR YDTLYLPKRF 301: MRENGVDKRC GEMILINEKG KSWTLDLKVK KSSGTSLIKR GWRSFCSANG LRAGSIITLK LIKKRATLVL RLIPNEPEEA NEVVSLSTEQ ESDEESIHDE 401: KISRRKSLLS ENRFVTLTLT PYTIQSSLLN ENLLCESMFQ RLPVPFTRMN GINEETKMTL LDKHGVKWLT TLRFEDDKRK RLRMVGGWQG FIQANDVKAN 501: ESIMLELIWE EETSCVLKFC SKVKLEIK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)