AT4G00090.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transducin/WD40 repeat-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: periodic tryptophan protein 2 (TAIR:AT1G15440.2); Has 19942 Blast hits to 11235 proteins in 520 species: Archae - 42; Bacteria - 5638; Metazoa - 5982; Fungi - 4099; Plants - 1742; Viruses - 0; Other Eukaryotes - 2439 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:34234..36594 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 46553.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.63 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||||||||||
| Length | 430 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDSVLVVGIA SVILGALIAV LFFGSYFRKR TSEVQSMAKA EPQDPIRNPK SNHPAPKKNH PKSQASDKNQ NKRHHPLDLN TLKGHGDAVT GLCFSSDGKS 101: LATACADGVI RVFKLDDASS KSFKFLRINL PAGGHPTAVA FADDASSIVV ACHHMSGSSL YMYGEDKQKD QQGKLPLPSI KWDHHHIHEK RSVLTISGAT 201: ATYGTADGSV VIASCSEGTD IVLWHGKTGR NLGHVDTNQL KNHMAAVSPN GRFLAAAAFT ADVKVWEIVY QKDGSVKEVS RVMQLKGHKS AVTWLCFSPN 301: SEQIITASKD GSIRVWNINV RYHLDEDPKT LKVFPIPLCD SGGNPLHYDR LSLCPEGKIL AASHGSTLQW LCAETGNVLD TAEKAHEGDI TCISWAPKAI 401: TVGERHAMVL GTSGDDKKVK LWEAPKSQSL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)