AT3G63460.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.756 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : transducin family protein / WD-40 repeat family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G18830.1); Has 36280 Blast hits to 25623 proteins in 1259 species: Archae - 42; Bacteria - 4996; Metazoa - 13160; Fungi - 7289; Plants - 4519; Viruses - 551; Other Eukaryotes - 5723 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:23431009..23437241 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 119723.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.76 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.33 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 1102 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MACIKGVGRS ASVALAPDAP YMAAGTMAGA VDLSFSSSAN LEIFKLDFQS DDRDLPLVGE IPSSERFNRL AWGRNGSGSE EFALGLIAGG LVDGNIDLWN 0101: PLSLIGSQPS ENALVGHLSV HKGPVRGLEF NAISSNLLAS GADDGEICIW DLLKPSEPSH FPLLKGSGSA TQGEISFISW NRKVQQILAS TSYNGTTVIW 0201: DLRKQKPIIN FADSVRRRCS VLQWNPNVTT QIMVASDDDS SPTLKLWDMR NIMSPVREFT GHQRGVIAME WCPSDSSYLL TCAKDNRTIC WDTNTAEIVA 0301: ELPAGNNWNF DVHWYPKIPG VISASSFDGK IGIYNIEGCS RYGVEENNFA PLKAPKWYKR PVGASFGFGG KLVSCHARAP AKGTSSILSE VFLHSLVTEQ 0401: SLVSRTSEFE AAIENGDMTS LRGLCEKKSE ETESEEEKET WGLLKIMFEE EGTSRTKLIS HLGFTLPVAE KDQAVDGLSS DLNGIRLEDT AADALDLDDS 0501: NEAAAFAMDN GEDFFNNFPA KPDTPVSTSA KDFMPSDTDF STKGEETQEM QEEEEESSDP VFDNAIQRAL IVGDYKEAVD QCITANKMAD ALVIAHVGGT 0601: ALWESTREKY LKTSSAPYMK VVSAMVNNDL RSLIYTRSHK FWKETLALLC TFAQGEQWTT LCDALASKLM AAGNTLAAVL CYICAGNVDR TVEIWSRSLA 0701: NERDGRSYAE LLQDLMEKTL VLALATGNKK FSASLCKLFE SYAEILASQG LLTTAMKYLK VLDSGGLSPE LSILRDRISL SAEPETNTTA SGNTQPQSTM 0801: PYNQEPTQAQ PNVLANPYDN QYQQPYTDSY YVPQVSHPPM QQPTMFMPHQ AQPAPQPSFT PAPTSNAQPS MRTTFVPSTP PALKNADQYQ QPTMSSHSFT 0901: GPSNNAYPVP PGPGQYAPSG PSQLGQYPNP KMPQVVAPAA GPIGFTPMAT PGVAPRSVQP ASPPTQQAAA QAAPAPATPP PTVQTADTSN VPAHQKPVIA 1001: TLTRLFNETS EALGGARANT TKKREIEDNS RKLGALFVKL NSGDISKNAA DKLAQLCQAL DNNDFSTALQ IQVLLTTSEW DECNFWLATL KRMMVKARQN 1101: VR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)