AT3G62850.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.884 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : zinc finger protein-related | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
zinc finger protein-related; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880); BEST Arabidopsis thaliana protein match is: Putative endonuclease or glycosyl hydrolase (TAIR:AT3G62200.1); Has 530 Blast hits to 298 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 57; Fungi - 2; Plants - 471; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:23237487..23239155 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 53680.70 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.44 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||
| Length | 472 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MYTPGAAKPE YARAKIAVWW DMKDCPIPEG YDARLVRPSI EAAFNELGYS GPISITGYGD QRETPCQILR GLSSTGVAVA QIIPESRCSL MYSSMLEWRD 101: LNPPPATMML VSDQWQHVFA WDLSRLQQHT KYNLFLAYST EPFAGSALRP CGEWIWRNLL ETKREFVQDK CSSSCEVSPM FYCKSCSYQG QSVEGFRRHV 201: SSGKHAVKEV TNRIHPELDY LTRTWAKNYT AKPEYATAPI VVWWDMKDCP IPEGYDARQV RPSLEGAFKK LGYSGPVSIT GCGDHNKTPD HILRELSSTG 301: VDLAHSIDEV IYSRMFINMK QWKARNPPPA TIMLISDGVV MMFENLIADL LQETKYNLFL AYSYRPYKMS VLLTSAEWLW KSLLVAGVFF SSPYHHHPLM 401: TLFLSYIITL SVSETRNHVL RKCSQSQRGE PSTKMFSCML CLCDCKSLED LRTHLSSEDH AVCVSILLCI II |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)