AT3G62690.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.988 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : AtL5 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a RING-H2 zinc finger protein related to ATL2. The ATL gene family is represented by fifteen sequences that contain, in addition to the RING, a transmembrane domain which is located in most of them towards the N-terminal end. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
AtL5 (ATL5); FUNCTIONS IN: zinc ion binding; INVOLVED IN: protein complex assembly; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G47560.1); Has 10661 Blast hits to 10636 proteins in 314 species: Archae - 0; Bacteria - 0; Metazoa - 2642; Fungi - 1094; Plants - 5229; Viruses - 125; Other Eukaryotes - 1571 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:23185829..23186602 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 28593.90 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.25 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||||||||||
| Length | 257 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGNLFDSSKT LWGNMNHGSS RYSLNGKIML ASVIILFVAV ILILCFHSYA RWLFRRQNRR IRRRISAHLR SLAAARDPTQ SSSSLSPLDP TVLEKIPIFV 101: YSVKTHESPL EECSVCLSEF EEDDEGRVLP KCGHVFHVDC IDTWFRSRSS CPLCRAPVQP AQPVTEPEPV AAVFPSVKPI EDTEAGSSSS SDESESSTPS 201: SSSGSPVRFP MEACEREPID LVGIIVEIPR EFQDSNSDLP ADNGSNRRAS LKRLWII |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)