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AT3G62540.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G14820.1); Has 36772 Blast hits to 11783 proteins in 282 species: Archae - 3; Bacteria - 24; Metazoa - 449; Fungi - 549; Plants - 34543; Viruses - 0; Other Eukaryotes - 1204 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AL162507EMBL:CP002686
EnsemblPlants:AT3G62540EnsemblPlants:AT3G62540.1entrez:825428GeneID:825428
Genevisible:Q3EAF8GO:GO:0005739Gramene:AT3G62540.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF429HOGENOM:HOG000241375InParanoid:Q3EAF8InterPro:IPR002885
KEGG:ath:AT3G62540OMA:FISGHIRPaxDb:Q3EAF8Pfam:PF01535
Pfam:PF13041Pfam:PF13812Pfam:Q3EAF8Pfscan:PS51375
PhylomeDB:Q3EAF8PIR:T48046PRIDE:Q3EAF8PRO:PR:Q3EAF8
PROSITE:PS51375ProteinModelPortal:Q3EAF8Proteomes:UP000006548RefSeq:NP_191813.1
SMR:Q3EAF8STRING:3702.AT3G62540.1SUPFAM:SSF81901TAIR:AT3G62540
TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.34092UniProt:Q3EAF8
Coordinates (TAIR10) chr3:-:23133514..23135313
Molecular Weight (calculated) 68510.80 Da
IEP (calculated) 7.78
GRAVY (calculated) -0.35
Length 599 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAAPWLYLS RRRSSTQTSL RRFLICSSSF DADEFISSQS RVIGGRGEEE VRFSGALFSR MIHSSTYHPY RQIPLPHSSV QLLDASLGCR GFSSGSSNVS
101: DGCDEEVESE CDNDEETGVS CVESSTNPEE VERVCKVIDE LFALDRNMEA VLDEMKLDLS HDLIVEVLER FRHARKPAFR FFCWAAERQG FAHASRTYNS
201: MMSILAKTRQ FETMVSVLEE MGTKGLLTME TFTIAMKAFA AAKERKKAVG IFELMKKYKF KIGVETINCL LDSLGRAKLG KEAQVLFDKL KERFTPNMMT
301: YTVLLNGWCR VRNLIEAARI WNDMIDHGLK PDIVAHNVML EGLLRSMKKS DAIKLFHVMK SKGPCPNVRS YTIMIRDFCK QSSMETAIEY FDDMVDSGLQ
401: PDAAVYTCLI TGFGTQKKLD TVYELLKEMQ EKGHPPDGKT YNALIKLMAN QKMPEHGTRI YNKMIQNEIE PSIHTFNMIM KSYFVARNYE MGRAVWDEMI
501: KKGICPDDNS YTVLIRGLIS EGKSREACRY LEEMLDKGMK TPLIDYNKFA ADFHRGGQPE IFEELAQRAK FSGKFAAAEI FARWAQMTRR RCKQRFMED
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)