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AT3G62390.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.992
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : TRICHOME BIREFRINGENCE-LIKE 6
Curator
Summary (TAIR10)
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Computational
Description (TAIR10)
TRICHOME BIREFRINGENCE-LIKE 6 (TBL6); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) (TAIR:AT3G12060.1); Has 1344 Blast hits to 1327 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1344; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEE6eggNOG:ENOG410Y9J1EMBL:AK229044EMBL:AL162507
EMBL:AY085065EMBL:CP002686EnsemblPlants:AT3G62390EnsemblPlants:AT3G62390.1
entrez:825412GeneID:825412Genevisible:Q9LZQ1GO:GO:0005794
GO:GO:0016021GO:GO:0016413GO:GO:0071554Gramene:AT3G62390.1
hmmpanther:PTHR32285hmmpanther:PTHR32285:SF19HOGENOM:HOG000238066InParanoid:Q9LZQ1
InterPro:IPR025846InterPro:IPR026057InterPro:IPR029962InterPro:IPR029965
KEGG:ath:AT3G62390OMA:EYYVTHFPANTHER:PTHR32285PANTHER:PTHR32285:SF19
PaxDb:Q9LZQ1Pfam:PF13839Pfam:PF14416Pfam:Q9LZQ1
PhylomeDB:Q9LZQ1PIR:T48031PRIDE:Q9LZQ1PRO:PR:Q9LZQ1
Proteomes:UP000006548RefSeq:NP_191798.1STRING:3702.AT3G62390.1TAIR:AT3G62390
tair10-symbols:TBL6TMHMM:TMhelixUniGene:At.34119UniProt:Q9LZQ1
Coordinates (TAIR10) chr3:-:23087275..23089142
Molecular Weight (calculated) 54640.90 Da
IEP (calculated) 9.85
GRAVY (calculated) -0.53
Length 475 amino acids
Sequence (TAIR10)
(BLAST)
001: MERQRSFSVK STRVLAFIIT IISSAIVFFT FFSSSLLKSN SSLYPTPEAN FQIDLSPIAA ISDSSVSPQA SPILISTHFN SPENTSGSSK ISVFEQKISG
101: ESLVKEVREI ANLTSIKVIE LPSNNGEDKK TEKRIEECDV TKGKWVYDSD YPLYTNASCP FIDEGFGCQS NGRLDLNYMN WRWEPQDCHA PRFNATKMLE
201: MIRGKRLVFV GDSINRNQWE SMLCLLFQAV KDPKRVYETH NRRITKEKGN YSFRFVDYKC TVEFYVTHFL VREGRARIGK KRRETLRIDA MDRTSSRWKG
301: ANILVFNTAH WWSHYKTKSG VNYYQEGDLI HPKLDVSTAF KKALQTWSSW VDKNVDPKKT RVFFRSAAPS HFSGGEWNSG GHCREANMPL NQTFKPSYSS
401: KKSIVEDVLK QMRTPVTLLN VSGLSQYRID AHPSIYGTKP ENRRSRAVQD CSHWCLPGVP DTWNHFLYLH LLHKR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)