AT3G62020.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.830 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : germin-like protein 10 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
germin-like protein (GLP10) | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
germin-like protein 10 (GLP10); FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: germin-like protein subfamily 2 member 2 precursor (TAIR:AT1G02335.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:22971443..22972018 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 20324.50 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.06 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.07 | ||||||||||||||||||||||||||||||||||||||||
| Length | 191 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSFLDYVGI KVNGFTCKPE SNITASDFFF AGIGKPAVVN NTVGSAVTGA NVEKIAGLNT LGVSLARIDY APGGLNPPHT HPRATEVIFV LEGELDVGFI 101: TTANKLFAKT VKKGEVFVFP RGLIHYQKNN DKAKPASVIS AFNSQLPGTQ SIAATLFTAT PAIPDHVLTT TFQIGTKEIE KIKSKFAPKK V |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)