AT3G61170.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G27610.1); Has 48118 Blast hits to 13655 proteins in 239 species: Archae - 0; Bacteria - 10; Metazoa - 89; Fungi - 49; Plants - 47457; Viruses - 0; Other Eukaryotes - 513 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:22638691..22641237 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 87744.10 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.31 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.11 | ||||||||||||||||||||||||||||||||||||||||
| Length | 783 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MHRLNYRKWR LPLKPFGSCI HSYADRTKLH SNLLLGDLSK SGRVDEARQM FDKMPERDEF TWNTMIVAYS NSRRLSDAEK LFRSNPVKNT ISWNALISGY 101: CKSGSKVEAF NLFWEMQSDG IKPNEYTLGS VLRMCTSLVL LLRGEQIHGH TIKTGFDLDV NVVNGLLAMY AQCKRISEAE YLFETMEGEK NNVTWTSMLT 201: GYSQNGFAFK AIECFRDLRR EGNQSNQYTF PSVLTACASV SACRVGVQVH CCIVKSGFKT NIYVQSALID MYAKCREMES ARALLEGMEV DDVVSWNSMI 301: VGCVRQGLIG EALSMFGRMH ERDMKIDDFT IPSILNCFAL SRTEMKIASS AHCLIVKTGY ATYKLVNNAL VDMYAKRGIM DSALKVFEGM IEKDVISWTA 401: LVTGNTHNGS YDEALKLFCN MRVGGITPDK IVTASVLSAS AELTLLEFGQ QVHGNYIKSG FPSSLSVNNS LVTMYTKCGS LEDANVIFNS MEIRDLITWT 501: CLIVGYAKNG LLEDAQRYFD SMRTVYGITP GPEHYACMID LFGRSGDFVK VEQLLHQMEV EPDATVWKAI LAASRKHGNI ENGERAAKTL MELEPNNAVP 601: YVQLSNMYSA AGRQDEAANV RRLMKSRNIS KEPGCSWVEE KGKVHSFMSE DRRHPRMVEI YSKVDEMMLL IKEAGYFADM SFALHDLDKE GKELGLAYHS 701: EKLAVAFGLL VVPSGAPIRI IKNLRVCGDC HSAMKLLVTF AIEGKLGKFC ISVCNNESYK VTNLQLYTFK LLVDVVAEVS EGS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)