AT3G60920.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Beige/BEACH (InterPro:IPR000409); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein / beige-related (TAIR:AT2G45540.1); Has 1795 Blast hits to 1563 proteins in 214 species: Archae - 2; Bacteria - 29; Metazoa - 830; Fungi - 160; Plants - 230; Viruses - 0; Other Eukaryotes - 544 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:22503328..22513031 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 213266.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.04 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 1941 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MNGKESRGPA CSFEFVGESS GLLGPGESRW PFTNGYAFAT WIYIESFADT LDASTAAAAI AAASAAKSGK ISNAAPANVH TGEGTAHMPR LFSFLTPDNQ 0101: GIEAYFYAQF LVVESGSGKG SKTSLHFTHA FKPQCWYFIG LEHTCNQGLL GNSDSELRLY IDGSLYETRP FDYPRISKPL SFCCIGSNPP STTAGLQRRR 0201: RQCALFAEMG PVYIFKEPIG PERMTRLATR GGDVLPCFGN GAGLPWLATN DHVRNVAEES SLSDAELGGY IHLLYHPCLL SGRFCPDASL SGAAGDEKTP 0301: YSFSAVVFAL CYLVFPYFGR PMSLLPLTVS SVHKDNLEPC SRNVPSSLTT YSLAAPIFRM ISFAIKHPGN NEELSRTRGP EILATVLGYL LHSLASFDIK 0401: HDRVGDEELV AAIVSLCQSQ KINHALKVQL FCTLLLDLKI WSVCSYRLQK KLLSSLQDMV FTEATAMRNA DAIQVLLDGC RRYFWTIQEK DSVNTFSLDG 0501: DARQVGEVNA LVDELLVIIE LLMGAASPSF AADDLHRLLG FIIESPQPNQ VARVLHLMFR LVVQPNAAKA QTFAEAFITS GGIETLLVLI ANRVNTMGLE 0601: TESFQQVKVH GSETVICETG SVTLSSSVNA DRISSVSETP FNNNARNNVD DRDRVMVGII RLIGALISKG HLKFSVGAKS DVMSNLMGSE FRENGGTMFD 0701: YKVALLLFAL LKAFQAAPNR LMTDNVYTTL LGASVNASST EDGLNFCDLG HRFEHPQLLL ILLRSLPFAS KALQNRALQD ILFLACTHPE KRSSLTKMEE 0801: WPEWILEILI SNYEKDAGKQ SASPGSAEEE DLIHNFLIIM LEHSMRQKDG WKDIEATIHC AEWLTFVGGS STGEKRIRRE ESLPIFKRRL LGGLLDFAAS 0901: ELQAQTQVIA AASAGFAAES LTPKDAKAGV ENAALLSVFL VENTVVILML VEDHLRLQSK QNCAASAVDV SPSPLSLVYP PNYRSHTLPT VGESSEVSSS 1001: CASVSSDSGG VHLDILASMA DASGQISTAV MERLAAAAAA EPYESVSCAF VSYGSCTRDL ADAWKYRSRL WYGVGLPSKT SCFGGGGSGW DSWKHALQKD 1101: AQGNWIELPL VKKSVSMLQA LLLDESGLGG GLGIGGGSGT GMGGMSGLYQ LLDSDQPFLC MLRMVLLSLR EEDHGEDSLL MKNLSSEDGI TGGLQCPLGN 1201: SASVDISSQL SMRQSPSALL WSVLSPVLNM PISDSKRQRV LVTTCVLYSE VWNAVSKDKR PLRKQYLEAI LPPFVAILRR WRPLLAGIHE LSTGDGVNPL 1301: VVDTRALAAD ALPIEAALSM ISPEWAAAFA SPPSAMALAM IAAGAAGWEA PAHPAPPAPP PLRRDSSLLE RKSTKLQTFS SFQKPLEAPN DDTPGRARDK 1401: AAANIDSHLL IQPLTRLTGV FWKLDSMESS SRMRQCLRRN YSGTGHLETT RNYGDQTYLM NNHDSPVLAV EAISKEIMYE DDEHGDADDL EIEGNVGERK 1501: GENEERRSGS LEDAITLSTG INDHRPLSEQ NMVQNSTEVK DLSELKERIV LEISSTMVRP LGVVKGTFQI TTRRINFIVD IREDQHLDEK SDGSKSRDEE 1601: RDRSWLMSSL HQIYSRRYLL KKSALELFMV DRSNFFFDFG NTEGRRNACR AIVQARPPHL KNIYSATQPE QVSRRTQLME RWARWEISNF EYLMQLNTLA 1701: GRSYNDITQY PIFPWILCDY VSEILDLSNP SNYRDLSKVP IGALNPERLK KFQEKHSSFE DPVIPKFHYG SHYSSAGAVL HYLARVEPFT TLSIQLQGRK 1801: FDRADQIFSD IAATWKGVLQ DMNNVKELNT TDPNTHMVSS FSNPTTSETE PDSDMNIVST PSNATTNQID TESSEAANYE NSNSSIKTSK NTSKITKLTP 1901: TSKRSLTSSK DNAAQKSSTK PKLLSKAEII KVDVYSYIMS L |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)