AT3G60790.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : F-box family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G67390.1); Has 1408 Blast hits to 1399 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1404; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:22464623..22466948 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55930.20 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.73 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.13 | ||||||||||||||||||||||||||||||||||||
| Length | 488 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTTQSSSSSS SLPSSLSSTP PLLASNARCK VLRTGASSKG KGKGIKYPVD RISMLPDEML QKILSTLSTK DAVITSTLSK RWVDQWKRIP HLCVDMRNIM 101: RTNPTSYVHE LSFRFAESMT KTLNNHRGHL ESCTISHIQF IFLFIDRWIQ TVTREKQTKE ITLVNNIGCM TPFVRYNSLH LSPSAFCHPS LTSLSLTRYK 201: LLEKAFKNCC NLKILKLYDI MSDVSVLSNV IKACSSLEVL VLQITFLNQA SALKIENKKL EFLQVTWPCL MNRMEVNTPR LVIFDIKSIY CFGYSVEAPK 301: LSMFKRDYWV GGMSYPHLSY HISSLAQEKI RIWLELMVSQ IYHMKRTGSL SVSVDVRNPN EVEILKEVLL LWDGEMMDLE ILFKNNNAPI EEGESFITGG 401: ARNKWWDGEK PFPDDFFRVC TVWMYNFDGS NEEEFALASR FVTQGTVTEK LMIKTSTYPP VKQLMTEAKV AKLMELPKGY EYLDIECF |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)