AT3G60460.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : myb-like HTH transcriptional regulator family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes an R2R3 myb transcription factor that is required for male gamete formation, specifically for entry of the generative cell into mitosis. Specifically expressed in the male germline. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
DUO POLLEN 1 (DUO1); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 97 (TAIR:AT4G26930.1); Has 8477 Blast hits to 7784 proteins in 475 species: Archae - 0; Bacteria - 0; Metazoa - 778; Fungi - 457; Plants - 5496; Viruses - 3; Other Eukaryotes - 1743 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:-:22342429..22343491 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 33651.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.08 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.74 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 297 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEAKKEEIKK GPWKAEEDEV LINHVKRYGP RDWSSIRSKG LLQRTGKSCR LRWVNKLRPN LKNGCKFSAD EERTVIELQS EFGNKWARIA TYLPGRTDND 101: VKNFWSSRQK RLARILHNSS DASSSSFNPK SSSSHRLKGK NVKPIRQSSQ GFGLVEEEVT VSSSCSQMVP YSSDQVGDEV LRLPDLGVKL EHQPFAFGTD 201: LVLAEYSDSQ NDANQQAISP FSPESRELLA RLDDPFYYDI LGPADSSEPL FALPQPFFEP SPVPRRCRHV SKDEEADVFL DDFPADMFDQ VDPIPSP |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)