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AT3G60090.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.996
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : VQ motif-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
VQ motif-containing protein; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT2G44340.1); Has 66 Blast hits to 66 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JT9PeggNOG:ENOG4110825EMBL:AL138658EMBL:CP002686
EnsemblPlants:AT3G60090EnsemblPlants:AT3G60090.1entrez:825179GeneID:825179
Gramene:AT3G60090.1hmmpanther:PTHR33143hmmpanther:PTHR33143:SF12HOGENOM:HOG000153214
InterPro:IPR008889KEGG:ath:AT3G60090OMA:HVVKEEWPfam:PF05678
PhylomeDB:Q9M1D4PIR:T47833Proteomes:UP000006548RefSeq:NP_191568.1
STRING:3702.AT3G60090.1TAIR:AT3G60090UniGene:At.54013UniProt:Q9M1D4
Coordinates (TAIR10) chr3:+:22190858..22191331
Molecular Weight (calculated) 17955.10 Da
IEP (calculated) 6.35
GRAVY (calculated) -0.67
Length 157 amino acids
Sequence (TAIR10)
(BLAST)
001: MVRNSMKAEY DIDHLPHQTF YGDYSKTLVP MNKNSQIITK IKPKIRIIHI FAPEIINTDV KNFRTLVQSL TGKPEITKTG SKKKITNTNF PAPPGLPQDS
101: GQEHTAELDN RIIGSHVVKE EWGSSSNTNT YFDFDGLIDL DEDDNIFSSR WFDLQQQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)