AT3G60040.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.987 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : F-box family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
F-box family protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: male gametophyte, cultured cell; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Pentatricopeptide repeat (InterPro:IPR002885), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT1G06630.2); Has 42185 Blast hits to 11085 proteins in 246 species: Archae - 5; Bacteria - 27; Metazoa - 105; Fungi - 161; Plants - 41065; Viruses - 0; Other Eukaryotes - 822 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:22175937..22179728 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 94199.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.23 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.07 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 838 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGIGWSLHNR DGTQILHGSG AIHPTQSPTE AEAEALRLAV LDLRRLGYSH VTFCGDLKLI YDTLQRCALR GNNASWKYLH IATYLADVLK ISKLCSFNFI 101: HISRDANDIA DRLAKQARCN GLDYVICWTS SSLVLNVKQR NYVTDIYNDV NNISSINAFQ DLAGSLDELK TTSFIVVLTF WVCFLIKTPI KFRIEGTTPS 201: FSGSVFALLH DSVSGTFISM DAKMFDTICS RDAISWLPDE VLGKILSLIP TKQAVSTSLL AKKWRTIFRL VDHLELDDSF SLQAVKDQTP GLRKHVRFVF 301: TEDFKIFVDR TLALQCDYPI KNFSLKCHVS KYDERQKACV GRWISNVVGR GVFELDLRMK DPGIHFLPPH LVASKTLVKL TLGTQLCLGQ LPSYVSLPSL 401: KSLFIDTIVF YDIEDLCCVL LAGCPVLEEL SVHHHDFIAT PHTISSPTLK RLSVDYHCPD DVDSASHMSF DLPKLVYLEY SHCALGEYWQ INLESLVEAK 501: LDLGLERKVL RMDVTDLIIG IRNVQSLHLS PDSVHVIYSY CRHGLPVFKN LVNLSFGSKN KRGWRLLANL LKQSTKLETL IVKDLNGYTG DVSMPLNKVT 601: SLHILGYRGT ADEVKQLKSF IGEFECLELV QVDVAEAAED NGKILQSKRD LMMLLGVSLP SKCQFKSVLD ELNVRVSGIL VIGVLDGTQL LLIILLHILG 701: KGNKPLAALT TLNHMKEVGI DPSVLHYTTL IDGYVVSGEL DKAKEMFREM TVKGQLPNVF TYNSMIRGLC MAGEFREACW LLKEMESRGC NPNFVVYSTL 801: VGYLRKAGKL SEARKVIKEM VKKGHYVHLV SKMMKYRR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)