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AT3G59880.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.867
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G44010.1); Has 20 Blast hits to 20 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JJC5eggNOG:ENOG4111E1JEMBL:AY924801EMBL:CP002686
EMBL:DQ132702EnsemblPlants:AT3G59880EnsemblPlants:AT3G59880.1entrez:825158
GeneID:825158GO:GO:0005886Gramene:AT3G59880.1hmmpanther:PTHR35485
hmmpanther:PTHR35485:SF1KEGG:ath:AT3G59880OMA:HRLFSCVPhylomeDB:Q5BPM7
Proteomes:UP000006548RefSeq:NP_191547.2STRING:3702.AT3G59880.1TAIR:AT3G59880
UniGene:At.54010UniProt:Q5BPM7
Coordinates (TAIR10) chr3:+:22121069..22121446
Molecular Weight (calculated) 14027.30 Da
IEP (calculated) 9.79
GRAVY (calculated) -0.82
Length 125 amino acids
Sequence (TAIR10)
(BLAST)
001: MDGLIPMAFK AMRKNRTRKR YECLSSSAGT TKDSYDDSDF FPFAAKSDHS VVSRPSSSFD HIEMNNVDVQ QRHHRGWSVG DFSSMSCREG KRSGVDGGDI
101: GFSPSRRGQL VRNRSHRLFS CVSGE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)