AT3G59820.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : LETM1-like protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
LETM1-like protein; FUNCTIONS IN: calcium ion binding; LOCATED IN: mitochondrion; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), LETM1-like (InterPro:IPR011685); BEST Arabidopsis thaliana protein match is: LETM1-like protein (TAIR:AT1G65540.1); Has 1687 Blast hits to 1622 proteins in 328 species: Archae - 23; Bacteria - 178; Metazoa - 665; Fungi - 245; Plants - 190; Viruses - 5; Other Eukaryotes - 381 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:22098306..22101759 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 85739.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.68 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.51 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 755 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASRAIVRRK NIISDYLNVY ARSIQSFQYI GNSSQTVHSH AYHSGINRPP VETKPVTEHK SFTRRDGLLL LSRNGYFNRS FHGFHSSGFG YGSSEVGPSL 101: GMRYMSLSIR NATTVAAKKP EEEDKKVDEL AKNRKEASPE ECDQAVESLS SVKAKAKAKR LQESKKVARS IVQRAWAIVL KIGPAIKAVA SMNRADWAKK 201: LTHWKHEFVS TLKHYWLGTK LLWADTRISS RLLLKLAGGK SLSRRERQQL TRTTADIFRL VPFAVFILVP FMEFLLPVFL KLFPNMLPST FQDKMKEEEA 301: LKRKLLARIE YAKFLQETAR EMAKEVKHSR TGEVKQTAED LDEFLDKVRR GQIVHNDELL GFAKLFNDEL TLDNISRPRL VSMCKYMGIS PYGTDAYLRY 401: MLRKRLRSIK EDDKLIRAEG VDSLSEAELR EDCRERGMLG LVSVEEMRQQ LRDWMDLSLN HSVPSSLLIL SRAFTVAGRV KAEDAVRATL SSLPDEVVDT 501: VGITSLPSED PVSERRRKLE YLEMQEELIK EEEEKEEEEL TRIKDVKGGD EDKALQEMTI PTASEAQEQA RARVLEQQDD LCKLSRALGV LASASSVCRE 601: REEFLRLVKK EVEFYNTMVE REDVDGEKAA MKAYKAARVD IDQADEVAEA DEVSSALMEK VDGLIQNLEK EIDDVDIKIG KGWQLLDRDR DGKVTPDEVA 701: AAAMYLKDTL ANDGLQQLIS SLSKDKEGRI MVEDIVRLGR LGSKPEENAT EEESS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)