AT3G59590.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.849 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : jacalin lectin family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
jacalin lectin family protein; CONTAINS InterPro DOMAIN/s: F-box associated domain, type 1 (InterPro:IPR006527), Mannose-binding lectin (InterPro:IPR001229), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein / jacalin lectin family protein (TAIR:AT3G59610.1); Has 1611 Blast hits to 1208 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1611; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:22014167..22015768 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52025.30 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.92 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.44 | ||||||||||||||||||||||||||||||||||||||||
| Length | 454 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MELSFKREKI CSVEVNLDVP SIEVHSHNLP SYIPGYNGFF MTVEYCDGLV VYATENGIGI CNPLLRQIRW IKSKVNYRYN GVGYDNSRPE NHYKIFESCP 101: YSDTTVKASI TEFVSDAWIS KPYEFAYDWD FMSSYSVSLN GALYWVAFHM ASDDQFIQSF DFSTEKFEPY CLLPNKKCDP SNARSLAVFR GDRFSYLEQN 201: YETRNIEIWV TKKEIKIENG KAVEWMNLMK VSVPKWSSLR EKACIYIAKG DKFHEIIIND LVEYPTRHHR TYVPSLVPVP TFTMSNRSKT QQVESRFTPP 301: RGIQASDGGN EWDDGIFHNV KKINVGVNDF DTVFVKFHYS KYNRIEAGAG HGNATTHNPD DEIMIAGGDY IEAVEGTYTE SHITSITFRM RKGDMMPQYG 401: RLNGTPFSLR GERGSKAIGF YGRSSGVHLT ALGVHFSPPP LYYSFPNHSP VFNY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)