AT3G59300.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G24060.1); Has 75 Blast hits to 73 proteins in 16 species: Archae - 0; Bacteria - 6; Metazoa - 1; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:21918667..21921877 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51595.10 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.06 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.44 | ||||||||||||||||||||||||||||||||
| Length | 459 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVIAAASSFS LGPSHCHQSY TDEFSSSIPY KRTSNARNRV FDGCGSANLS VLSSRCKIPF FGSAFHVSSG GHDLGLTKVS VAADYSDSVP DSSFYGYHPL 101: EDLKPSKRVQ ETKLSASEVA RTTVEANSSA VLVFPGAIHC EPHDHNSWSE FKYVIDDYGD IFFEIPDDEN ILEDPGASNP VKAFFGMDVP RYENTRHHEE 201: YNISDIGNLD QIIFDDHYFE IMDSEARDIP IDWGMPDTSN GVHPIYFAKH LSKAISMDYD RKMDYPSNGV SILGCLRPAF LDEESYIRRL FLSEDRDDYS 301: WEVQGDDNPI TSSRRDENDM SSSLYRLEIV GIELLSLYGA ESSISLQDFQ DAEPDILVHS TSAIIERFNN RGINSSIALK ALCKKKGLHA EEANLISVDS 401: LGMDVRVFAG AQVQTHRFPF KTRATTEMAA EKKIHQLLFP RSRRRKLKCH DESLKDAFR |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)