AT3G59230.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.618 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNI-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT3G59210.4); Has 1688 Blast hits to 1636 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1688; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:21896052..21897787 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55163.70 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.95 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.06 | ||||||||||||||||||||||||||||||||||||||||
| Length | 491 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNSKKLNIGP KDIINSLPEA LIYHILSFLS TKEAAITSLL SRKWRYFFAF VPNLDFDDPV RMQPDMGNQE ETEIHTSFMD FVDRVLALRG NSHVNKFSLK 101: CGNGVDGVGV TRWILNTLEL SVSELDLSIA SDTTYLFPSK VFVSKSLVRL RIEARNGLAF GSLVIDVGDV SLPKLKTLYL DSVELDYQII CLAKLLSGCH 201: VLEELVMIDV VWNFWESCSA SIPTLKRLTF FTEEGWNNPP PSVTFDNPAL VYFEYTDTVA LKYEKVNFDS LVEARLGLRV GYEESENPIQ VPFGFPFPLI 301: EYAMVGDATD LLMGIRNVQV LYLYASTVEV LTFRCKAIPI FNNLTRLTIE SNTKVGWDSL PNLLKNCPNL KTLVFQGLLH KATDRCGDMC PCKPPENIHT 401: CLSSSPVKVL EILKFGEIND KTELEQTKHF LELMPHLEQL NIYYDTSVDD NLVKVSKQLQ EIPGVASAKC KVQVISDNLT LSVTLPSSSS I |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)