AT3G59080.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.992 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Eukaryotic aspartyl protease family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Eukaryotic aspartyl protease family protein; FUNCTIONS IN: DNA binding, aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT2G42980.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:21836812..21838419 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55357.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.18 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||||||||||
| Length | 499 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFSKYSFILC LIFFFVTAFS GDSRALAGNN EQKNISGFSG IDFPNPMRFG SASSSTSNDC GFSSPEKEPT KERTGENKTV KFHLKRRETT TTEKATTNSV 101: LELQIRDLTR IQTLHKRVLE KNNQNTVSQK QKKNDKEVVT TTPVASSVEE QAGQLVATLE SGMTLGSGEY FMDVLVGSPP KHFSLILDTG SDLNWIQCLP 201: CYDCFQQNDN QSCPYYYWYG DSSNTTGDFA VETFTVNLTT NGGSSELYNV ENMMFGCGHW NRGLFHGAAG LLGLGRGPLS FSSQLQSLYG HSFSYCLVDR 301: NSDTNVSSKL IFGEDKDLLS HPNLNFTSFV AGKENLVDTF YYVQIKSILV AGEVLNIPEE TWNISSDGAG GTIIDSGTTL SYFAEPAYEF IKNKIAEKAK 401: GKYPVYRDFP ILDPCFNVSG IHNVQLPELG IAFADGAVWN FPTENSFIWL NEDLVCLAML GTPKSAFSII GNYQQQNFHI LYDTKRSRLG YAPTKCADI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)