AT3G58900.4
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.841 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : F-box/RNI-like superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
F-box/RNI-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD-like (InterPro:IPR006566), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT3G58860.1). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:21773030..21774620 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 53420.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.31 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.08 | ||||||||||||||||||||||||||||||||
| Length | 465 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDLFSSLPNE LLYHILSFLS TKEAALTSVL SKRWRNLFAF VPYLEFDDSV FLHPEERKRE KEGILQSFMD FVDRVLDLHG DSLIKTFSLK CKTGVDSDHV 101: DRWICNVLAR GVSDLDLFID FRDLYSLPHE VGVSRTLVVL RVGSESDLYW WQKFLCLPML KTLVLDSCWL CIGQFQILLL ACPALEELDM TNTRWKDSNV 201: TVSSSILKEL TIDLHGCCSV VNLKSLSFDA PSLVYFYYCD SLAEDYPQVN LKNLVEAQIN LLLTQAQIEQ VRALNNEMLV ADDVFPGLGN AWKLITGLRN 301: VQQLYLSPDT LEVLSRCCEG MPVFNNLKVL SIWSDMNRGW QAMPVLLRNC PHLETLIIEG LLHYATDKCG DVCDCISRDY KDHSLTSCPV KKLQIYEFRG 401: TIRELEMIKH FLKIFPCLKE MDIYAHENSH TLFKDPTIFE RVGKVMNFYN MLSSCSVQLL VRGPL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)