AT3G58890.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNI-like superfamily protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT3G58950.1); Has 396 Blast hits to 389 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:21771046..21772577 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 33139.10 Da | ||||||||||||||||||||||||
| IEP (calculated) | 7.60 | ||||||||||||||||||||||||
| GRAVY (calculated) | 0.36 | ||||||||||||||||||||||||
| Length | 293 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQTLFLVPAQ QLVLQLASGG TFLPMLKTLI IKAKWIGSEW DETVSSASLR KLVIYCQGGC ADLLNSKSIS FDTPSLLYLV YSVFVAEDYP KVNLTNLVEA 101: KFNLMLLDEQ IEQIREPNDE DDVFLRLGNV LKLFAGIRNV QKLYLSANIL EVLSLCCESF PVFNNLKILR IRSAEDRGWQ AMPVLLRNCP HLETLVLEGL 201: IHYVTGECGN ACDCKSREGI VSSLLSCPVK KVQIKGFKGT MRESSMIWHF MTSFPCLKFL VYTPMDKKWI FGVAFSNVRV FIIDIVMIII FLS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)