AT3G58430.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.856 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TRAF-like family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
TRAF-like family protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT3G58410.1); Has 947 Blast hits to 668 proteins in 116 species: Archae - 6; Bacteria - 76; Metazoa - 52; Fungi - 17; Plants - 683; Viruses - 3; Other Eukaryotes - 110 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:21613163..21616174 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61420.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.01 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||||||
| Length | 535 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEKQAHKKFC WIIKNFSPQS ERLYSVPVLI GDCKWRPIAY PIRDKYFSLC LQVVDFESLP CGWGRYVELR LTLRNQHNSL NLSIKADHCF DEKRTTWGIP 101: IPERIPICKL QTELYQSEHV VKGDFKIIAE VDVFEAVGTL TESDISGKAS ELLTKKIRND GNESGDLLKK TSPEKESNHV NESKPVRKLR NFVVLYKRHA 201: AMCSVLQEPI CLLGIFHYTN GEASWAEVRV GVFLLNMTLC LPDSQLFPSE VVKARLTIVN QLSEKLSISK ESEHCFDEQN PTLGYTFPYE LLVEDGGFLV 301: NEDLMIIVEV IGASDVFEDS STQGKVDVNG FQVLPSQVEY VRSIFERHPD IAVEFRAKNQ HLRTSCMIFL LSLIETLCQS LEELSNEDLV EADIALTYVK 401: DAGFKVDWLE KKLDQVKEKK EKELSDMVQL QEMEDHLLKL KQSCSDLDDL VVKKKDELSV TRSPLSFDDV DWLEKKLDQV KDKKEREQSG LARLHELEEY 501: LLKLKQKCSN LDLLVEKENV ELSATRTPMS FNDVV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)