AT3G58320.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.975 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ubiquitin-specific protease family C19-related protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ubiquitin-specific protease family C19-related protein; BEST Arabidopsis thaliana protein match is: Arabidopsis phospholipase-like protein (PEARLI 4) with TRAF-like domain (TAIR:AT3G58270.2); Has 319 Blast hits to 295 proteins in 6 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 317; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:21585567..21586328 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 25713.10 Da | ||||||||||||||||||||||||
| IEP (calculated) | 4.29 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.56 | ||||||||||||||||||||||||
| Length | 224 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKCNNVIVSE ADTDDTAKED LFEDGTVEEY PDDDDASSLH QWKSMVYTSK TVENFGTECN NKESFYESWW ISDFLETIDV NGFQVLASQV QSVSQIFKRH 101: PDTAIGFRPK NQQIRKAYMD ALLSLIETLC QSPDKLSDDD LSNADETLVD LIDVGFKLDW LKTKLNDVSE KKKLGESSVV RLETMEEQLQ KLKHMVLDLE 201: SQMQKEKEKV LAARAPLSFK DIFY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)