AT3G58240.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.994 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TRAF-like superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
TRAF-like superfamily protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: Arabidopsis phospholipase-like protein (PEARLI 4) with TRAF-like domain (TAIR:AT3G58270.2); Has 522 Blast hits to 473 proteins in 26 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 2; Plants - 508; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:21568530..21569827 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 36429.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.52 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.39 | ||||||||||||||||||||||||||||||||||||
| Length | 317 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGNPVDNKFT WVIKNFCSVS PKPIYSDQFL IGGNKWHILA YSKKRDGHQF LCLDLELVDC EFLPSEWRKV VKVSFTVVNF FSKKLSRQIG LKHCFNKKER 101: SKGGSLFHLS ELTDKKSGFL VDGEVEIVAQ ITVLETDRRF HVSKDYNMEM QCWDGMATTL VENKELNDDD KAGLVNVKGF QVLPSQLGIV NRIFEKHPET 201: ALECCTKNQE LRASYINVIF SLIKLLYKGA QEHSTHDLSD AEGALAYMKN LGFKLDWLEK KLDEVKEIKK KCERVTEMEK ELHDLMNKHT NVSKLLEKEK 301: LEIKNASAPD LSFSDVI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)