AT3G58220.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.874 What is SUBAcon? |
|
||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : TRAF-like family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
TRAF-like family protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: Arabidopsis phospholipase-like protein (PEARLI 4) with TRAF-like domain (TAIR:AT3G58270.2); Has 43233 Blast hits to 11874 proteins in 1028 species: Archae - 67; Bacteria - 21678; Metazoa - 7333; Fungi - 1846; Plants - 1609; Viruses - 309; Other Eukaryotes - 10391 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:-:21565173..21566435 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 40885.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.76 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.05 | ||||||||||||||||||||||||||||
| Length | 351 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGRIGSPLGK NEFSWVIKDF SSLGVRAIYS DEFVIGGCKW RLIAYPMGNR IKKYMSLYVE VADSKHLPSG WSINTELRME VVNHNLYKPS QQKYRKNLWF 101: DQKTPSWGYK TMIRHSKLSG EEGFLVSGEV TIVVKIDVYR VFGKVAAIEI SEEGSKEGYE YESEEVYKKE SEEGYKYESE EDYEKRPIER FEYESEAESK 201: KDYEERTRGG FEYESEPVSK KDYEERPRES FEYESEAESK KDSEEGSRER YEYESEEESK KDSENDCGEE SEKDSEEGSR PLKKIKRNDD GVKSNDSVNK 301: TQQVKETMDI NGFQVLPSQV SGNFKLLRHC YHLTLVDFGT KGVTLLNTEK M |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)