AT3G57370.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cyclin family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cyclin family protein; FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription regulator activity, zinc ion binding, translation initiation factor activity; INVOLVED IN: translational initiation, regulation of transcription, DNA-dependent, transcription initiation; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: M germinated pollen stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIB related (InterPro:IPR000812), Transcription factor TFIIB, cyclin-related (InterPro:IPR013150), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin-like family protein (TAIR:AT3G10330.1); Has 1320 Blast hits to 1319 proteins in 324 species: Archae - 441; Bacteria - 0; Metazoa - 207; Fungi - 261; Plants - 140; Viruses - 3; Other Eukaryotes - 268 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:21226839..21228475 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 39700.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.76 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.20 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 360 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTMKWGHSCR RCKQINVVTD HVTRRTRCFG CGLEFKYRPI GDLSPVAEND TVRLPDPTNT LLSNTDLSIV TTEHKNGSFD DSLSLNLGNS SKPRLDPVSI 101: ATAKLMNGSS NDFLSLGTSQ NSETITASSD EFLFSDLGHL QKFSFDPLSM ASTKPNKALS IVSIEAISNG LKLPATIKGQ ANEIFKVVES YARGKERNVL 201: FAACIYIACR DNDMTRTMRE ISRFANKASI SDISETVGFI AEKLEINKNW YMSIETANFI KRFCSIFRLD KEAVEAALEA AESYDYMTNG RRAPVSVAAG 301: IVYVIARLSY EKHLLKGLIE ATGVAENTIK GTYGDLYPNL PTIVPTWFAN ANDLKNLGAP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)