AT3G56940.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:peroxisome 0.391 plastid 0.324 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : dicarboxylate diiron protein, putative (Crd1) | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a putative ZIP protein with varying mRNA accumulation in leaves, stems and roots. Has a consensus carboxylate-bridged di-iron binding site. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
COPPER RESPONSE DEFECT 1 (CRD1); FUNCTIONS IN: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity, DNA binding; INVOLVED IN: chlorophyll biosynthetic process, oxidation reduction, photosynthesis; LOCATED IN: chloroplast thylakoid membrane, chloroplast inner membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase (InterPro:IPR008434), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078), Rubrerythrin (InterPro:IPR003251). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:21076825..21078269 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 39181.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.38 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.30 | ||||||||||||||||||||||||||||||||||||||||
| Length | 332 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEQLFNTEIN KNLNEAEFEA LLQEFKTDYN QTHFVRNKEF KEAADKLQGP LRQIFVEFLE RSCTAEFSGF LLYKELGRRL KKTNPVVAEI FSLMSRDEAR 101: HAGFLNKGLS DFNLALDLGF LTKARKYTFF KPKFIFYATY LSEKIGYWRY ITIYRHLKEN PEFQCYPIFK YFENWCQDEN RHGDFFSALM KAQPQFLNDW 201: QAKLWSRFFC LSVYVTMYLN DCQRTNFYEG IGLNTKEFDM HVIIETNRTT ARIFPAVLDV ENPEFKRKLD RMVVSYEKLL AIGETDDASF IKTLKRIPLV 301: TSLASEILAA YLMPPVESGS VDFAEFEPNL VY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)