AT3G56410.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.966 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF3133) | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF3133); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3133 (InterPro:IPR021480); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3133) (TAIR:AT5G05190.1); Has 4873 Blast hits to 3554 proteins in 469 species: Archae - 21; Bacteria - 552; Metazoa - 1496; Fungi - 390; Plants - 373; Viruses - 48; Other Eukaryotes - 1993 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:20916320..20921134 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 174664.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 4.44 | ||||||||||||||||||||||||
| GRAVY (calculated) | -1.00 | ||||||||||||||||||||||||
| Length | 1535 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MMKKKKQSRS QSSSTKKTFE PSSDSSPSPR LLSIIRSKLA SSKDLKHMFR GMRSRTVPGL SSQSRIVRCP KCHKLLQEPL DATSYKCGGC DSILHAKRWE 0101: PDGNDHTNTI PEALLSSQNR SLSAEVESPE DGSRTPMRTT HREYNSRPST SVERGYHPET VYKPETSDIR REWMRRTDDF SETGDSDVFT SERSSPYNTR 0201: SNAAQWAQHE GRYADPPRVP FYPASPSPSS AYEYGYSSPF HGSYVSASEQ SYYHQQPNQF EQYSREGWFQ ESSVASPTRF PGETSDGKYY HRSSQSQLHD 0301: LQYHNLYEPS RSETPHHSVY SERSYVPAAA PHRSTYSEHS VGISKSDTSS EKSILRNKKR YVRERNPVVK RHILPSAGGA PFATCSYCLE LLQLPQVSPQ 0401: GKRQRYQVRC GSCSGVLKFS IREKADTVLD SPSFVDYGMD FADETVTNHQ DSASEGHEEI NPDGSHLTCL DDDSGETICK SNDAVILSQK ILETFEDKGI 0501: KEDIRNISTK FLDLKLEALQ PHLKPMGNRR LSEQQPTSSE TIGETSKIHL EQSQEAHSEK STEMDNNICD IEEPEYEKNE IIKPEEIVGE GSGESLEVPV 0601: NQNERMSESS EEDERVAERS VSHSEELLYK KEYVSETRVQ SENTGDTYEF EWEETQETEE YEGESTLEEI GDKPQLHLDK SRYTRDSICD SSLSYGEPFE 0701: DTSVKEDTEH ISNTISDAKS ATTHSPLNSL VNENQRFIGH LDQSGEATVT ISRIQEHSKY EYENLSERQE LEMTISDRVT CKLEESRYET NETLEPSKVG 0801: EDGSLVSFEK VSEAFETIIE GKTGEERLVS HQMDSPNENV ENSYGTLEPV YLEESGFAGE RTWEGTIEDR AGLHLEEYES NYENYSRPFE WTSETAPTFR 0901: MHDYELGTIL EPDEYADGRS ESSSRGSFND DGGSEERVVF HESQVAIPEQ SHYEYENSSK RQELSDTVFD IARSELQEYR YERNETLEPS KMVGDGSVVP 1001: VEKAGETFIS KKNEDSSVSH QMESQNEDME NSYGTKEPVY PEGSRCESEN SWAETMGDGA GLKLEEYNSN PFEWTSEKAA AFHLHEYERW TVPEPEEDAN 1101: ERSITSSRDS FNDHENLKGI AVSHEEEPWL VDENRTEALK VGVMVEDEPS LHLTKFENET MKLEETLEWT SERAPTFRLP EYELGEMLES DNDVDERSEY 1201: SSKGSFNDHE IPRELLNEED PQLVIDGRTE AVQVGEMAKD TVSLHLEECG NESMKLDETF EWTSGRTLTF RRHGYEVETK LEADEDADGR SESSSRGSFN 1301: DRGSSKERAV LHEDGSWLVD DYETKALKVG VMAEDGSSLQ LEKGENGKMD LDETLEPRDD IFRLSLDDTL EQERMTFHLK MSQDKQESLR QTFKQGDAEK 1401: DSDVFSEGHE FPSKMAELDS DTEEEIVEEQ LEHLQKENEK LSLTFEQHDH IYSTTEPSEI VGLRHALYQT QNSPLRSPLT SPIHTPIGSP LHYLMASQIR 1501: SPIASTMHSH IVSPLRSPIN SSGSLSDVLF FSKKT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)