AT3G56410.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:mitochondrion 0.934 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Protein of unknown function (DUF3133) | ||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Protein of unknown function (DUF3133); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3133 (InterPro:IPR021480); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3133) (TAIR:AT5G05190.1); Has 4900 Blast hits to 3562 proteins in 473 species: Archae - 21; Bacteria - 563; Metazoa - 1503; Fungi - 393; Plants - 371; Viruses - 54; Other Eukaryotes - 1995 (source: NCBI BLink). | ||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:-:20916320..20920877 | ||||||||||||||||||||||||
Molecular Weight (calculated) | 169416.00 Da | ||||||||||||||||||||||||
IEP (calculated) | 4.36 | ||||||||||||||||||||||||
GRAVY (calculated) | -1.00 | ||||||||||||||||||||||||
Length | 1488 amino acids | ||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
0001: MFRGMRSRTV PGLSSQSRIV RCPKCHKLLQ EPLDATSYKC GGCDSILHAK RWEPDGNDHT NTIPEALLSS QNRSLSAEVE SPEDGSRTPM RTTHREYNSR 0101: PSTSVERGYH PETVYKPETS DIRREWMRRT DDFSETGDSD VFTSERSSPY NTRSNAAQWA QHEGRYADPP RVPFYPASPS PSSAYEYGYS SPFHGSYVSA 0201: SEQSYYHQQP NQFEQYSREG WFQESSVASP TRFPGETSDG KYYHRSSQSQ LHDLQYHNLY EPSRSETPHH SVYSERSYVP AAAPHRSTYS EHSVGISKSD 0301: TSSEKSILRN KKRYVRERNP VVKRHILPSA GGAPFATCSY CLELLQLPQV SPQGKRQRYQ VRCGSCSGVL KFSIREKADT VLDSPSFVDY GMDFADETVT 0401: NHQDSASEGH EEINPDGSHL TCLDDDSGET ICKSNDAVIL SQKILETFED KGIKEDIRNI STKFLDLKLE ALQPHLKPMG NRRLSEQQPT SSETIGETSK 0501: IHLEQSQEAH SEKSTEMDNN ICDIEEPEYE KNEIIKPEEI VGEGSGESLE VPVNQNERMS ESSEEDERVA ERSVSHSEEL LYKKEYVSET RVQSENTGDT 0601: YEFEWEETQE TEEYEGESTL EEIGDKPQLH LDKSRYTRDS ICDSSLSYGE PFEDTSVKED TEHISNTISD AKSATTHSPL NSLVNENQRF IGHLDQSGEA 0701: TVTISRIQEH SKYEYENLSE RQELEMTISD RVTCKLEESR YETNETLEPS KVGEDGSLVS FEKVSEAFET IIEGKTGEER LVSHQMDSPN ENVENSYGTL 0801: EPVYLEESGF AGERTWEGTI EDRAGLHLEE YESNYENYSR PFEWTSETAP TFRMHDYELG TILEPDEYAD GRSESSSRGS FNDDGGSEER VVFHESQVAI 0901: PEQSHYEYEN SSKRQELSDT VFDIARSELQ EYRYERNETL EPSKMVGDGS VVPVEKAGET FISKKNEDSS VSHQMESQNE DMENSYGTKE PVYPEGSRCE 1001: SENSWAETMG DGAGLKLEEY NSNPFEWTSE KAAAFHLHEY ERWTVPEPEE DANERSITSS RDSFNDHENL KGIAVSHEEE PWLVDENRTE ALKVGVMVED 1101: EPSLHLTKFE NETMKLEETL EWTSERAPTF RLPEYELGEM LESDNDVDER SEYSSKGSFN DHEIPRELLN EEDPQLVIDG RTEAVQVGEM AKDTVSLHLE 1201: ECGNESMKLD ETFEWTSGRT LTFRRHGYEV ETKLEADEDA DGRSESSSRG SFNDRGSSKE RAVLHEDGSW LVDDYETKAL KVGVMAEDGS SLQLEKGENG 1301: KMDLDETLEP RDDIFRLSLD DTLEQERMTF HLKMSQDKQE SLRQTFKQGD AEKDSDVFSE GHEFPSKMAE LDSDTEEEIV EEQLEHLQKE NEKLSLTFEQ 1401: HDHIYSTTEP SEIVGLRHAL YQTQNSPLRS PLTSPIHTPI GSPLHYLMAS QIRSPIASTM HSHIVSPLRS PINSSGSLSD VLFFSKKT |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)