AT3G56320.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.994 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : PAP/OAS1 substrate-binding domain superfamily | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
PAP/OAS1 substrate-binding domain superfamily; FUNCTIONS IN: nucleotidyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Nucleotidyl transferase domain (InterPro:IPR002934), PAP/25A-associated (InterPro:IPR002058); BEST Arabidopsis thaliana protein match is: Nucleotidyltransferase family protein (TAIR:AT2G40520.4); Has 391 Blast hits to 365 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 57; Fungi - 102; Plants - 177; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:20886193..20888624 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 66965.90 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.48 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||||||
| Length | 603 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGEIQERLSV SSSSSSSSSS LSLSTALPKG DSLPIDADSW MIAEERAHEI LCTIQPALVS DRSRNEIIDY VRTLIMSHEG IEVFSFGSVP LKTYLPDGDI 101: DLTVLTKQNM DDDFYGQLCS RLQNEERESE FHATDVQFIP AQVKVIKCNI RNIAVDISFN QTAGLCALCF LEQVDQLFGR DHLFKRSIIL VKAWCYYESR 201: ILGANTGLIS TYALAVLVLY IINLFHSSLS GPLAVLYKFL DYYGSFDWNN YCISVNGPVP ISSLPELTAA SPENGHELLL DEKFLRNCVE LYSAPTKAVD 301: SNGLEFPIKH LNIVDPLKYS NNLGKSVTQG NVQRIRHAFT LGARKLRDVL SLPGDTMGWR LEKFFRNSLE RNGKGQRQDV NDPVTAFGTG RSELSELSGD 401: FDSSFGRLVY GQMYHGHSLP GTFQHGYIPV SSHLSGWDIV RHLVTYRKNE FHLRSLNVST SMQPFPLHSL PNGCQNMRKT RGTGTYIPDM SQQVYSDRFR 501: ESGTGTSSTN HLEASSEAID NDGASSCCNL SGEVSTSCTS NKGEECVRPE SVLKSQRSAN LELDDNCQFP PPENLVEPRT SSTLVLENGK EESIRSSQTM 601: NGS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)