AT3G56130.2
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.438 endoplasmic reticulum 0.279 What is SUBAcon? |
|
||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||
| Description (TAIR10) | protein_coding : biotin/lipoyl attachment domain-containing protein | ||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||
| Computational Description (TAIR10) |
biotin/lipoyl attachment domain-containing protein; FUNCTIONS IN: binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089); BEST Arabidopsis thaliana protein match is: Single hybrid motif superfamily protein (TAIR:AT1G52670.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:20827850..20829007 | ||||||||||||||||||||
| Molecular Weight (calculated) | 21782.10 Da | ||||||||||||||||||||
| IEP (calculated) | 5.29 | ||||||||||||||||||||
| GRAVY (calculated) | -0.16 | ||||||||||||||||||||
| Length | 205 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTYGCTFLYM LLDEMLQALV HEMCDETEVA VLQLKVGDFE MNLKRKIGAA TNPIPVADIS PTVAPPIPSE PMNKSASSAP SPSQAKPSSE KVSPFKNTSY 101: GKPAKLAALE ASGSTNYVLV TSPAVGKFQR SRTVKGKKQS PSCKEGDAIK EGQVIGYLHQ LGTELPVTSD VAGEVLKLLS DDGDSVGYGD PLVAVLPSFH 201: DINIQ |
||||||||||||||||||||
| See Also |
|
||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)