AT3G55930.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pre-mRNA-splicing factor 3 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pre-mRNA-splicing factor 3; CONTAINS InterPro DOMAIN/s: Pre-mRNA-splicing factor 3 (InterPro:IPR013881); BEST Arabidopsis thaliana protein match is: Pre-mRNA-splicing factor 3 (TAIR:AT1G28060.1); Has 549 Blast hits to 518 proteins in 205 species: Archae - 0; Bacteria - 10; Metazoa - 155; Fungi - 156; Plants - 71; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:20745382..20746964 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50738.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.09 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.93 | ||||||||||||||||||||||||||||||||||||
| Length | 437 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDNRKERYSK SIRGDRDERD RTKHHHERSH EGSKRKDREE ENGTARATNK KSRFEDVARF ENRPYTCSIA SETTSGQIIV AVKRFQDLAH KQTKGFVLRV 101: DALGREIDEH GNVISVTKPI NHSTLMVNIR DNVPHRKLSK ILSEWWDAKI LTDDTINELS CDPNILIMDT ITENHLNMKV FNCHIEHPFP IEPPAEAASP 201: PPQPLKMTKE ERKKLRTLRR VAKEMEKREM ISQGRVEPQK SKVKMSNLMK VRASEATQNP TKLEKEIRTE AAEREQAHMD RNVARKLTPA EKREKKERKL 301: FGDPTTVVET IVSVYKINKK LSDPKTRFKV RMNAKQNILT GFSVMMDGMS VVVVEGKRKA INRYEKLMLK RINWEEAEKK EDEEENGGNK CCLVWQGSVE 401: KPSFHRFHVQ ECLTKSDAKK VFNDAGVAHY WDLALNY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)