AT3G55870.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.452 endoplasmic reticulum 0.226 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : ADC synthase superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ADC synthase superfamily protein; FUNCTIONS IN: oxo-acid-lyase activity, anthranilate synthase activity; INVOLVED IN: tryptophan biosynthetic process, biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: sepal, male gametophyte, flower, carpel, cultured cell; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Anthranilate synthase component I, N-terminal (InterPro:IPR006805), Chorismate binding, C-terminal (InterPro:IPR015890), ADC synthase (InterPro:IPR005801), Anthranilate synthase component I (InterPro:IPR019999), Anthranilate synthase component I, PabB-like (InterPro:IPR005256); BEST Arabidopsis thaliana protein match is: anthranilate synthase alpha subunit 1 (TAIR:AT5G05730.1); Has 15837 Blast hits to 15836 proteins in 2536 species: Archae - 246; Bacteria - 10713; Metazoa - 5; Fungi - 310; Plants - 185; Viruses - 0; Other Eukaryotes - 4378 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:20731326..20733765 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55370.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.46 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 492 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIKRLQVSFS NLLSQDITLP LFVVGAHPKM EIVAKENKVT VMDHVKGTKT TEEVEDPMMI PRRISETWKP QLIDDLPDVF CGGWVGYFSY DTVPYAEKRK 101: LPLSKAPVDD RNLPDMHLGL YDDVVVFDHV EKKIHIIHWV RLSENSSFDD VYANAVKHLE ELVSRIKCMN PPKLPYGSVD LHTNQFGTPL EKSSMTSDAY 201: KNAVLQAKEH ILAGDIFQIV LSQRFERHTF AHPFEVYRAL RIVNPSPSMC YLQARGCILV ASSPEILTRV KKNKIVNRPL AGTARRGKSF EEDQMLEEAL 301: LKDEKQCAEH IMLVDLGRND VGKVSKNGSV KVERLMNIER YSHVMHISST VIGELQENLT CWDTLRAALP VGTVSGAPKV KAMELIDELE VTRRGPYSGG 401: FGSVSFTGDM DIALALRTIV FPTQARYDTM YSYKDKDTPR REWIAYLQAG AGIVADSDPE DEHRECQNKA AGLARAIDLA ESAFVDKSDT TI |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)