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AT3G55680.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Plant invertase/pectin methylesterase inhibitor superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant invertase/pectin methylesterase inhibitor superfamily protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: pedicel, synergid; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT2G31430.1); Has 30 Blast hits to 30 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AL161667EMBL:CP002686EnsemblPlants:AT3G55680EnsemblPlants:AT3G55680.1
entrez:824734Gene3D:1.20.140.40GeneID:824734GO:GO:0004857
Gramene:AT3G55680.1HOGENOM:HOG000064547InterPro:IPR006501KEGG:00040+3.1.1.11
KEGG:00500+3.1.1.11KEGG:ath:AT3G55680ncoils:CoilOMA:CEDEWKN
Pfam:PF04043PhylomeDB:Q9M054PIR:T47707Proteomes:UP000006548
RefSeq:NP_191127.1SMART:SM00856SMR:Q9M054SUPFAM:SSF101148
TAIR:AT3G55680TIGRfam:TIGR01614TIGRFAMs:TIGR01614TMHMM:TMhelix
UniGene:At.53941unipathway:UPA00545UniProt:Q9M054
Coordinates (TAIR10) chr3:-:20665685..20666315
Molecular Weight (calculated) 20859.40 Da
IEP (calculated) 7.37
GRAVY (calculated) 0.12
Length 183 amino acids
Sequence (TAIR10)
(BLAST)
001: MASMLIKHLT LPSSLLVFVF FAFTVADAMS IKDMYAFCKD TDDVNFCLKY IGTDIRILAA RDLHDVLVIA ISQCQIQLTK ATKQINKVRQ KFSGPIGTRR
101: LYFCGKHYCL ASAFFQKAYE EAQEEGLESI AQLSAVDGSH YMFKCEDEWK NNGPIQKSPF TFYYTNVVEL LSIIQVIIEK MYG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)