AT3G55515.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.539 What is SUBAcon? |
|
||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : ROTUNDIFOLIA like 7 | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||
| Computational Description (TAIR10) |
ROTUNDIFOLIA like 7 (RTFL7); CONTAINS InterPro DOMAIN/s: DVL (InterPro:IPR012552); BEST Arabidopsis thaliana protein match is: ROTUNDIFOLIA like 8 (TAIR:AT2G39705.1); Has 170 Blast hits to 170 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 170; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:20590923..20591162 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 9148.99 Da | ||||||||||||||||||||||||
| IEP (calculated) | 11.29 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.97 | ||||||||||||||||||||||||
| Length | 79 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
1: MSRLRNSAQL QLSKKESLGD NGGALNTTRS SRQKQGKYGF TRKCGRLVKE QRARFYIMRR CVVMLICWTD HNNNNSDHS | ||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)