AT3G55480.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.816 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : protein affected trafficking 2 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
protein affected trafficking 2 (PAT2); FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, endocytosis, protein transport; LOCATED IN: membrane coat, Golgi apparatus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Adaptor protein complex AP-3, beta subunit (InterPro:IPR017108), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553); BEST Arabidopsis thaliana protein match is: Adaptin family protein (TAIR:AT4G23460.1); Has 2490 Blast hits to 1771 proteins in 223 species: Archae - 0; Bacteria - 20; Metazoa - 1008; Fungi - 721; Plants - 224; Viruses - 0; Other Eukaryotes - 517 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:20566372..20571171 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 122995.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.19 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.07 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 1115 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MFNKFGSTSE TLSKASAGLL RIGTDAHLYD DPEDVNIAPL LDSKFESEKC EALKRLLALI AQGFDVSNFF PQVVKNVASQ SSEVKKLVYL YLLQYAEKRP 0101: NEALLSINYF QKDLGDPNPL VRAWALRTMA GIRLHVIAPL ALAAVSKCAR DPAVYVRRCA ANALPKLHDL RLEEHASAIE ELVGILLNDH SPGVVGAAAA 0201: AFTSICPNNF KLIGKNYKKL CQILPDVEEW GQILLIGTLL RYVVARHGLV RESLMLSIHG TNSNGFCEKD GLGRDLTLDK EDGGKSDSFD VNLVSLVSKC 0301: YIQGPDEYLS RSSCTDTVSS AFDTKETTSI AHNEDVKILL QCTSPLLWSN NSAVVLAAAG VQWIMAPLED VKKIVKPLLF LLRSSSASKY VVLCNILVFA 0401: KAVPSLFAPH FENFFICSSD AYQVKAYKLE MLSLIATTSS IASILREFED YIKDPDRRFA ADTVAAIGLC AKRLMTIPTT CLDGLLALVR QESFAGDFES 0501: ADGEAGVLVQ AVMSIQTMIE RDPLRHEKVL IQLFRSLDSI KVAAARATII WMVGVYCSLG HIIPRMLTTI TKYLAWSFKS EASETKLQIL NTIAKVLISA 0601: EAGDFHMLKR IVVYVFELGE YDLSYDIRDR TRFLKKLLSC KLASHEPAED SVASQENIAA HVVEHVFGRK LKSVSPITLH NRFYLPGSLS QIVLHAAPGY 0701: EPLPKPCSFV YEEQDQLSDL DKQREAAADL DGSEESSETG DENGSSDYDS ESSNGSDFSS EGDERTVSND ANDPAAPLIQ ISETSVSADQ EELRSRRALD 0801: LWLDDQPSTS NQTPSALNSN QSSYAKISIG DVGSRVKPKS YSLVDPGNGS GLKVDYAFLS EVSNVSPLHV CVEVLFENSS AEPILEVNLE DEESMKVADS 0901: SEQTLVGKAN ASYNNIPTLI PMEEISCLEP HQSTKRLIQV RFHHHLLPMR LTLHYNEKKV PVKLRPDLGY LVKPFSMSIE EFLATESRLP GMFEYSRRCT 1001: FDDHVKDSRT ENGKDKFLSI CESITLKVLS NSNLHLVSVD LPVANSLEDA TGLRLRFSSK ILSSEIPLLI TITVEGKCTE VLNLTVKINC EETVFGLNLL 1101: NRIANFMVEP SSSAT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)