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AT3G55440.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31541795 (2020): plasma membrane
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:30135097 (2018): plastid
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25805245 (2015): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22574745 (2012): mitochondrion
  • PMID:22550958 (2012): plastid
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16207701 (2006): plastid
  • PMID:14671022 (2004): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : triosephosphate isomerase
Curator
Summary (TAIR10)		 Encodes triosephosphate isomerase.
Computational
Description (TAIR10)		 triosephosphate isomerase (TPI); FUNCTIONS IN: triose-phosphate isomerase activity, copper ion binding; INVOLVED IN: in 7 processes; LOCATED IN: in 8 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Triosephosphate isomerase, active site (InterPro:IPR020861), Aldolase-type TIM barrel (InterPro:IPR013785), Triosephosphate isomerase (InterPro:IPR000652); BEST Arabidopsis thaliana protein match is: triosephosphate isomerase (TAIR:AT2G21170.1); Has 11466 Blast hits to 11464 proteins in 3595 species: Archae - 48; Bacteria - 6204; Metazoa - 1205; Fungi - 243; Plants - 477; Viruses - 0; Other Eukaryotes - 3289 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G55440-MONOMERBioCyc:MetaCyc:AT3G55440-MONOMERBioGrid:10026BRENDA:5.3.1.1
EC:5.3.1.1eggNOG:COG0149eggNOG:KOG1643EMBL:AF375426
EMBL:AL132975EMBL:AY074822EMBL:CP002686EMBL:U02949
EnsemblPlants:AT3G55440EnsemblPlants:AT3G55440.1entrez:824710Gene3D:3.20.20.70
GeneID:824710Genevisible:P48491GO:GO:0004807GO:GO:0005507
GO:GO:0005618GO:GO:0005739GO:GO:0005773GO:GO:0005774
GO:GO:0005829GO:GO:0005886GO:GO:0006094GO:GO:0006096
GO:GO:0006098GO:GO:0009506GO:GO:0009507GO:GO:0009570
GO:GO:0009651GO:GO:0009735GO:GO:0010043GO:GO:0019563
GO:GO:0044262GO:GO:0046166GO:GO:0046686GO:GO:0048046
Gramene:AT3G55440.1gramene_pathway:5.3.1.1gramene_pathway:CALVIN-PWYgramene_pathway:GLYCOLYSIS
gramene_pathway:PWY-1042gramene_plant_reactome:1119519gramene_plant_reactome:6877176HAMAP:MF_00147_B
HOGENOM:HOG000226413InParanoid:P48491IntAct:P48491InterPro:IPR000652
InterPro:IPR013785InterPro:IPR020861InterPro:IPR022896iPTMnet:P48491
KEGG:00010+5.3.1.1KEGG:00051+5.3.1.1KEGG:00562+5.3.1.1KEGG:00710+5.3.1.1
KEGG:ath:AT3G55440KO:K01803OMA:AGECETHPaxDb:P48491
PDB:4OBTPDBsum:4OBTPfam:P48491Pfam:PF00121
Pfscan:PS51440PhylomeDB:P48491PIR:T47683PIR:T50646
PRIDE:P48491PRO:PR:P48491PROSITE:PS00171PROSITE:PS51440
ProteinModelPortal:P48491Proteomes:UP000006548Reactome:R-ATH-70171Reactome:R-ATH-70263
RefSeq:NP_191104.1scanprosite:PS00171SMR:P48491STRING:3702.AT3G55440.1
SUPFAM:SSF51351SWISS-2DPAGE:P48491TAIR:AT3G55440tair10-symbols:ATCTIMC
tair10-symbols:CYTOTPItair10-symbols:TPITIGRfam:TIGR00419TIGRFAMs:TIGR00419
UniGene:At.24563UniGene:At.31873UniPathway:UPA00109UniPathway:UPA00138
UniProt:P48491World-2DPAGE:0003:P48491
Coordinates (TAIR10) chr3:+:20553794..20556078
Molecular Weight (calculated) 27170.50 Da
IEP (calculated) 5.17
GRAVY (calculated) 0.08
Length 254 amino acids
Sequence (TAIR10)
(BLAST) 		001: MARKFFVGGN WKCNGTAEEV KKIVNTLNEA QVPSQDVVEV VVSPPYVFLP LVKSTLRSDF FVAAQNCWVK KGGAFTGEVS AEMLVNLDIP WVILGHSERR
101: AILNESSEFV GDKVAYALAQ GLKVIACVGE TLEEREAGST MDVVAAQTKA IADRVTNWSN VVIAYEPVWA IGTGKVASPA QAQEVHDELR KWLAKNVSAD
201: VAATTRIIYG GSVNGGNCKE LGGQADVDGF LVGGASLKPE FIDIIKAAEV KKSA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)