AT3G55370.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : OBF-binding protein 3 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a nuclear localized Dof domain containing transcription factor expressed primarily in roots. Responsive to salicylic acid. Transgenic overexpressors have yellow leaves and short, defective roots. | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
OBF-binding protein 3 (OBP3); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: DNA binding with one finger 2.4 (TAIR:AT2G37590.1). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:20527198..20528876 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 40728.70 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.80 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.48 | ||||||||||||||||||||||||||||||||
| Length | 368 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVFSSLPVNQ FDSQNWQQMI SILVFFSTSR LFKKLFLVDK NLFSCLLQGL MYNVFLTGLI FSLQGNQHQL ECVTTDQNPN NYLRQLSSPP TSQVAGSSQA 101: RVNSMVERAR IAKVPLPEAA LNCPRCDSTN TKFCYFNNYS LTQPRHFCKT CRRYWTRGGS LRNVPVGGGF RRNKRSKSRS KSTVVVSTDN TTSTSSLTSR 201: PSYSNPSKFH SYGQIPEFNS NLPILPPLQS LGDYNSSNTG LDFGGTQISN MISGMSSSGG ILDAWRIPPS QQAQQFPFLI NTTGLVQSSN ALYPLLEGGV 301: SATQTRNVKA EENDQDRGRD GDGVNNLSRN FLGNININSG RNEEYTSWGG NSSWTGFTSN NSTGHLSF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)