AT3G55070.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.998 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
| FP Images |
7-day old Arabidopsis seedling (no marker)
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : LisH/CRA/RING-U-box domains-containing protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
LisH/CRA/RING-U-box domains-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ran binding protein, CRA domain (InterPro:IPR019589), CTLH, C-terminal LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), Ran binding protein-like, CRA domain (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: LisH/CRA/RING-U-box domains-containing protein (TAIR:AT4G37880.1); Has 891 Blast hits to 870 proteins in 200 species: Archae - 0; Bacteria - 0; Metazoa - 367; Fungi - 300; Plants - 157; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:20408377..20410887 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47844.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.30 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.45 | ||||||||||||||||||||||||||||||||||||||||
| Length | 418 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEIDSATNGN SDTVMTESAA TITPSPVVVS SSRSNQFTES LKLEHQLLRV PFEHYKKTIR TNHRSFEKEV STIVNGVGEL ADSDWSKDDT VSRLTCLVTR 101: LQGLKRKLEE GSNVENLQAQ RCRARIDHLD SVDVENITEW NNTKLKRILV DYMLRMSYFE TATKLSESSN IMDLVDIDIF REAKKVIDAL KNREVASALT 201: WCADNKTRLK KSKSKFEFQL RLQEFIELVR VDTAESYKKA IQYARKHLAS WGTTHMKELQ HVLATLAFKS TTECSKYKVL FELRQWDVLV DQFKQEFCKL 301: YGMTMEPLLN IYLQAGLSAL KTPYGLEEGC TKEDPLSQEN FRKLALPLPF SKQHHSKLVC YISKELMDTE NPPQVLPNGY VYSTKALKEM AEKNGGKITC 401: PRTGLVCNYT ELVKAYIS |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)