AT3G54780.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.961 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Zinc finger (C3HC4-type RING finger) family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: Zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G38970.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:20278985..20281429 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 70294.50 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.06 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||||||||||
| Length | 633 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVSKWKKMKL ALSLNLCNYL PRTLEEEPPS LALNSAETLS DAALLSPLNW PMTPTPSSYR RRLSRSSSKS SKQTCSICLN KMKEGCGHAI FTAECSHMFH 101: FHCIASNVKH GNQVCPVCRA KWKEIPIQKP SLDLPYYPFD RCNNDAAISL FRCLPPSQRA ITQGHPEPAT FDDDERLEEQ IVFDGETEVL KKENRDYVRM 201: MDMKVYPEVS AVPQSKSCEN FDVLVHLKAV TGDQISQYRR APIDLVTVLD ISGSMGGTKL ALLKRAMGFV IQNLGSSDRL SVIAFSSTAR RLFPLTRMSD 301: AGRQLALQAV NSLVANGGTN IVDGLRKGAK VMEDRLERNS VASIILLSDG RDTYTTNHPD PSYKDALAQC IGGLLSVAVQ ELRVEIEGVS PNVRLSSIKA 401: GSYSSLVTGD GHSGLVDLGD LYADEERDFL VSINIPVEED GHTPLLKLRC LYINPLTKEI TTLESHVLQI RRPEYVAEEK VVPIEVVRQR NRFLAAEAMA 501: QARTLAEHGD LEAAVKAIEN FRLVLAETVA AKSCDRFCVA LDSELKEMQG RMRSSHMYEA SGRAYILSGL SSHSWQRATA RGNSRDSSSF VQAYQTPSMA 601: EMLRRSQAMF LVSPSHHRLI QPLLSFASQP KPR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)