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AT3G54670.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Structural maintenance of chromosomes (SMC) family protein
Curator
Summary (TAIR10)
Encodes a member of the Arabidopsis cohesin complex that is essential for viability and sister chromatid alignment.
Computational
Description (TAIR10)
TITAN8 (TTN8); FUNCTIONS IN: transporter activity, ATP binding; INVOLVED IN: sister chromatid cohesion, chromosome segregation; LOCATED IN: cohesin complex, nucleus, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SMCs flexible hinge (InterPro:IPR010935), RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: structural maintenance of chromosome 3 (TAIR:AT5G48600.1); Has 200429 Blast hits to 91047 proteins in 3650 species: Archae - 2506; Bacteria - 36447; Metazoa - 81443; Fungi - 15311; Plants - 9097; Viruses - 946; Other Eukaryotes - 54679 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1196eggNOG:KOG0018EMBL:CP002686EnsemblPlants:AT3G54670
EnsemblPlants:AT3G54670.1entrez:824632ExpressionAtlas:F4JE02Gene3D:3.40.50.300
GeneID:824632GO:GO:0005524GO:GO:0005634GO:GO:0005694
GO:GO:0051276Gramene:AT3G54670.1hmmpanther:PTHR18937hmmpanther:PTHR18937:SF177
InterPro:IPR003395InterPro:IPR010935InterPro:IPR024704InterPro:IPR027417
ncoils:CoilPaxDb:F4JE02Pfam:PF02463Pfam:PF06470
PIRSF:PIRSF005719PRIDE:F4JE02ProteinModelPortal:F4JE02Proteomes:UP000006548
RefSeq:NP_191027.3SMART:SM00968SMR:F4JE02STRING:3702.AT3G54670.3
SUPFAM:0038317SUPFAM:SSF52540SUPFAM:SSF75553TAIR:AT3G54670
tair10-symbols:ATSMC1tair10-symbols:SMC1tair10-symbols:TTN8UniGene:At.21240
UniProt:F4JE02
Coordinates (TAIR10) chr3:+:20235818..20243701
Molecular Weight (calculated) 143223.00 Da
IEP (calculated) 8.01
GRAVY (calculated) -0.86
Length 1238 amino acids
Sequence (TAIR10)
(BLAST)
0001: MPAIQSPSGK ILQLEMENFK SYKGHQLVGP FKDFTAIIGP NGSGKSNLMD AISFVLGVRT GQLRGSQLKD LIYAFDDRDK EQRGRKAFVR LVYQMDDGVE
0101: LRFTRSITSA GGSEYRIDNR VVNLDEYNGK LRSLGILVKA RNFLVFQGDV ESIASKNPKE LTGLLEEISG SEELKKEYEG LEEKKASAEE KAALIYQKKK
0201: TIGNEKKLKK AQKEEAEKHL RLQEELKALK RERFLWQLYN IENDIEKANE DVDSEKSNRK DVMRELEKFE REAGKRKVEQ AKYLKEIAQR EKKIAEKSSK
0301: LGKIQPELLR FKEEIARIKA KIETNRKDVD KRKKEKGKHS KEIEQMQKSI KELNKKMELF NKKRQDSSGK LPMLDSQLQD YFRLKEEAGM KTIKLRDEHE
0401: VLERQRRTDL EALRNLEENY QQLINRKNDL DEQIKRFKDR QGEIETSSSK YKNETTSLKT ELRALQEKHV NAREASAKLK TRIAELEDQL SDLTAERYEN
0501: ERDSRLTQAV ESLKRLFQGV HGRMTDLCRP NRKKYNLAVT VAMGRFMDAV VVEDENTGKD CIKYLKEQRL PPMTFIPLQS VRVKQVFERL RNLGGTAKLV
0601: FDVIQYPLHI SEVSKIYIFV LNYSTFDPEL EKAVLYAVGN TLVCDELEEA KVLSWSGERF KVVTVDGILL TKAGTMTGGT SGGMEAKSNK WDDKKIEGLK
0701: KNKEDFEQQL ENIGSIREMQ MKESEISGKI SGLEKKIQYA EIEKKSIKDK LPQLEQEERN IIEEIDRIKP ELSKAIARTE VDKRKTEMNK LEKRMNEIVD
0801: RIYKDFSQSV GVPNIRVYEE TQLKTAEKEA EERLELSNQL AKLKYQLEYE QNRDVGSRIR KIESSISSLE TDLEGIQKTM SERKETAVKI TNEINNWKKE
0901: MEECKQKSEE YEKEILDWKK QASQATTSIT KLNRQIHSKE TQIEQLISQK QEITEKCELE HITLPVLSDA MEEDDSDGPQ FDFSELGRAY LQERRPSARE
1001: KVEAEFRQKI ESKTSEIERT APNLRALDQY EAIQEKEKQV SQEFEAARKE EKQVADAFNT VKQKRYELFM EAFNHIASNI DKIYKQLTKS NTHPLGGTAY
1101: LNLENEDDPF LHGIKYTTMP PTKRFRDMEQ LSGGEKTVAA LALLFSIHRP SPFFILDEVD AALDNLNVAK VAKFIRSKSC QAARDNQDAE DGNGFQSIVI
1201: SLKDSFYDKA EALVGVYRDT ERSCSSTMSF DLRNYQES
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)