AT3G54510.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Early-responsive to dehydration stress protein (ERD4) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Early-responsive to dehydration stress protein (ERD4); LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: hypothetical protein 1 (TAIR:AT3G01100.1); Has 1250 Blast hits to 1225 proteins in 183 species: Archae - 0; Bacteria - 0; Metazoa - 176; Fungi - 586; Plants - 385; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:20180689..20183220 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 70658.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.46 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.12 | ||||||||||||||||||||||||||||||||
| Length | 617 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MCRIRFFLMC SLLGASLLLP VDYYNESDLP TRREYSMDAF TISNITRGSN KLWVHFSCLW CISFYALFLL HKEYKEILVI RLQQMKELRH RADQFTVLVR 101: QVPLCPEHNT RGCAVDHFFS KHHRFSYHSH QMLYDGRDLE YLLGKQKKLK KELEDKRHTE ILSNGSQEHK QISTSEEKLR EITHMIYHLQ SETMLREKEL 201: PVAFVTFKSR RNAALAAQTQ QHSNPLELIT EMAPEPRDVS WRNLAIPQKI LPLNKIGVIL AAALLTIFFA IPVTAVQGIA KYEKLKKWFP PAMAIEFIPG 301: LSSVVTGYLP SAILKGFMYI IPFAMLGLAY LGGSISNSKE EIKACNMVFY FLMGNVFFLS LISGSLLDEI GEYLTHPRDI PSHLAAAVSA QAEFFMTYIL 401: TDGLSGFSLE ILQLGLILFD IIRSYTYGRG KERTPYLFSF PYFRVIPTVS LSIMIGMIYA VVAPLMLPFL VGYFCLGYIV YFNQMEDVYE TTYDTCGRFW 501: PFIHHYIFVS IILMQITMVG LFGLKSKPSA AIATVPLILI TIAYNEYCKI RFLPSFKHFP IQTAVEIDEE DEKNGEMETH YVDAATAYNR HQPCLERVSS 601: AESPTNLSQP LLGTDSI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)