suba logo
AT3G54310.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 0.973
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38430.1); Has 44 Blast hits to 41 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGJQeggNOG:ENOG410YAQYEMBL:AL132957EMBL:CP002686
EnsemblPlants:AT3G54310EnsemblPlants:AT3G54310.1entrez:824598GeneID:824598
Gramene:AT3G54310.1hmmpanther:PTHR35481hmmpanther:PTHR35481:SF1HOGENOM:HOG000239089
KEGG:ath:AT3G54310OMA:VSKMSCKPhylomeDB:Q9M375PIR:T47590
Proteomes:UP000006548RefSeq:NP_190999.1TAIR:AT3G54310UniGene:At.53930
UniProt:Q9M375
Coordinates (TAIR10) chr3:-:20111153..20112944
Molecular Weight (calculated) 40629.00 Da
IEP (calculated) 8.53
GRAVY (calculated) -0.38
Length 358 amino acids
Sequence (TAIR10)
(BLAST)
001: MSYVPPHKRL ENVALRASSV PPSLLKKHNK NVGSTNTKII YANGYISRWF LVGSDPEDSN FQLVPGSSEW RKDAEEKSLV ILAKSDLGKL ENPWLWVTEK
101: VEDDIIMGFD RAKKTLLGYG GSEDVKLRLI ARFGTLRDGP LTKSTLEKLK KMFRTNVPKS YVENVGYRAV HKMGFCVEET KELYHVKVSD NTRPDVTISC
201: KCMAELNALR HLNLDVSCLD QDLDMRLMVD SKRTLTNLSE NEITNLKELT DSAVVDPTVK GGLKWPLGKS SCADRYIVCG VWHTVTTTYI NQTMRLQIRE
301: ADRYDFRTGV GGTSSEVNFK LKALSTILLK EEDVERKCVS DMLKDCLKAV WEYFLKEV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)