AT3G54240.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.962 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : alpha/beta-Hydrolases superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: sepal, male gametophyte, flower, pollen tube, seed; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G36290.1); Has 1283 Blast hits to 1282 proteins in 323 species: Archae - 16; Bacteria - 778; Metazoa - 2; Fungi - 48; Plants - 315; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:20080926..20082145 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 39466.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.66 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||||||
| Length | 350 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKKWLITGAV VIVLIGLGAW AIVSITPPPP KRCGTPGGPP ITAPRIRLSD GRYLAYEEHG VSRQNATFKI VFIHAFSTFR RDAVIANRVR PGFLEKNGIY 101: VVSYDRPGYG ESDPHSSRNE KTLAHDVEQL ADQLQLGSKF YVVGYSMGGQ AVWGVLKYIP HRLAGATLLC PVTNSWWPSF PDSLTWELWN KQSKSERFSM 201: LITHHTPWLL YWWNNQKLFS TTAVMQSSPN MFSPQDLALL PKLAARVSYK NQTTQQGTHE SLDRDLIVGF GKWSFDPMKI ENPFPKGEGS VHMWQGDDDR 301: LVPIQLQRII AQKLTWIKYH EIPGAGHIFP MADGMAETIL KELLPIPQSS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)