AT3G54160.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.966 What is SUBAcon? |
|||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : RNI-like superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: Protein with RNI-like/FBD-like domains (TAIR:AT3G62430.1); Has 904 Blast hits to 882 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 904; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:20053468..20055027 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49883.60 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.26 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.02 | ||||||||||||||||||||||||||||
| Length | 434 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSEIVRVQEI VSKLWNLNIA SKKSPNLVTI ISNVGYNPSF ETNGSFKDFV SRLLARRDSY RIRRFSLKLR SLEFDSAKYH LVNECLRNVL NRGVLDLELD 101: INVNEVYKLP FEVFTCKKVV KLKLGSDFVI DNIPKNALLP ALKTLFLDKV RFIDKSGGCA FTRLVSACPV LEDLVIYRNN REDWEWSRIV SSKILKKLTI 201: RREDWEDLDG SSYESISFDT PSLEYFEYFD VLRDGYPVVD LKSLVEAKLE LPLFMVGDTY DVKNLIKGLE NVQILSLGVV DTMQVFCFFE EAVPVFENLF 301: HLSLSTEVDF CWNVLPILLE KSPNLKTLTI QALHYTTNHY GDENTVCDCL EVYSFLSSCH IEVLKITQFK GDIGEMVQIK HILEKLPSLE LLEIHGQVKG 401: DDKKLQIMLD LLMFERASSE CKVEVKFPVC FASA |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)