AT3G53910.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.584 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : malate dehydrogenase-related | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
malate dehydrogenase-related; FUNCTIONS IN: L-malate dehydrogenase activity, catalytic activity; INVOLVED IN: oxidation reduction, malate metabolic process, carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Malate dehydrogenase, NAD-dependent, eukaryote/gamma proteobacteria (InterPro:IPR010097), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: malate dehydrogenase (TAIR:AT3G47520.1); Has 612 Blast hits to 612 proteins in 147 species: Archae - 0; Bacteria - 92; Metazoa - 205; Fungi - 2; Plants - 297; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:19959856..19960446 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 12319.20 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.43 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.17 | ||||||||||||||||||||||||||||
| Length | 108 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFLRNSDPYA MISFLKSLIR ALDGDDDVFD FAFVASSVTE LPYFATRTKI GKKRIEEVID SDLQGLAKYE ERAIKAIKPR VKVTIEKDIT LLQRTFVAIS 101: VYKLLIVV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)