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AT3G53790.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.987
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : TRF-like 4
Curator
Summary (TAIR10)
Arabidopsis thaliana telomere-binding protein, putative (At3g53790)
Computational
Description (TAIR10)
TRF-like 4 (TRFL4); FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: TRF-like 2 (TAIR:AT1G07540.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT3G53790EnsemblPlants:AT3G53790.1entrez:824546hmmpanther:PTHR21717
hmmpanther:PTHR21717:SF9Pfam:PF00249Pfscan:PS51294tair10-symbols:TRFL4
Coordinates (TAIR10) chr3:+:19928478..19930267
Molecular Weight (calculated) 39608.80 Da
IEP (calculated) 9.82
GRAVY (calculated) -0.34
Length 354 amino acids
Sequence (TAIR10)
(BLAST)
001: MVDCGVDIYQ LPVVPRACRS PRGRRLKIMR KQRSEFEVLA QVAGRFSGER KNRIVIGSLA HETKETKDDN VVVNNFLETM EVEVKPQPGL ENLSQVLLSK
101: DWLALGPSMP NSPITQEENF DSRSKIVKFG IKSLNISELL VDVPESATVG SLKLAVLEAV TQILKGGLNI GVLFQGKTIV DDSKTLLQIG IPYDDDDDEN
201: LGSLGFMLEP QKSETTTITT LTTVSPRTRL RQNQVLGSVD STEAVAAKSV VPVRMKPAWQ PEMVQRRIRR PFTVSEVEAL VQAVERLGTG RWRDVKSHAF
301: NHVNHRTYVD LKDKWKTLVH TAKISARQRR GEPVPQDLLD RVLAAHAFWS DRTG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)