AT3G53540.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.996 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3741) (TAIR:AT4G28760.2); Has 1710 Blast hits to 868 proteins in 206 species: Archae - 2; Bacteria - 409; Metazoa - 304; Fungi - 204; Plants - 304; Viruses - 2; Other Eukaryotes - 485 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:19846805..19850670 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 103277.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.87 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.86 | ||||||||||||||||||||||||||||||||
| Length | 924 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNRFRLSDLS SRDRLASTLP TSHQGKKQKS QKLKSPRSSS PEFNSCHCEA LSENKQDFPT GVPMKSLLAQ EMSKQKESKK RSPSIIARLM GLDVLPSQSS 101: SHKQQKSMEN QQGRSGGGTS YKSLGKRSKG EQKFKDVFEV LDAKMAESNR NLYHQGRVNA NLTQAEMAFI RQKFMEAKRL STDDKLRHSK EFNDALEALD 201: SNKDLLLKFL QHPDSLFTKH LHDLQSTPHK PQYSQAPSLK SPNSQRHVDS LKTQKVDRDL LRKSHRSPHR NGGGGSGCPS RSHTRHASYD TIDLPNEELR 301: KRSELQPTKI VVLKPNLGEP RYAARTFASP SSSSDEFRAD RRLPCTTTHG RQKSNEDVRL SRQNSRDCGE MAKIMSRQRK VSCGNGRAMS FETSGFRGYA 401: GDESSSGSDS ASESELVPVT SGTRTAFNRR NYHRSLPSKS TTSSVSREAK RRLSERWKLT HKFEHEIEIS RSGTLAEMLA TSDREARPAS FNGLSFEDGI 501: SKRFENNIQW PELPEPVGIS SRDGWKGSCS RSFSKSRTIM NQESAGGYTI VLPKGLINRD ALVQGDSSHH GESFLSSKSR PGSNKSHSSY NSSPEVSITP 601: SLSKFVYMND GIPSKSASPF KARSSFSGDA NSDTEDSSAS DDIKTAMSSE ALDLSTVTSV TDPDISRRTT EDVNHSSVPD PPQPRESSKE GDQPSPVSVL 701: EASFDDDVSS GSECFESVSA DLRGLRMQLQ LLKLESATYK EGGMLVSSDE DTDQEESSTI TDEAMITKEL REEDWKSSYL VDLLANSSFS DSDHNIVMAT 801: TPVEPSLFED LEKKYSSVKT STRLERKLLF DQISREVLHM LKQLSDPHPW VKSTKVCPKW DANKIQETLR DLVTRKDEKP SKYDVEEKEL QWLSLEDDIE 901: IIGREIEVML TDELITELVV GAIF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)