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AT3G53370.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : S1FA-like DNA-binding protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
S1FA-like DNA-binding protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA binding protein S1FA (InterPro:IPR006779); BEST Arabidopsis thaliana protein match is: S1FA-like DNA-binding protein (TAIR:AT2G37120.1); Has 76 Blast hits to 76 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J6SNeggNOG:ENOG410ZCDZEMBL:AF370176EMBL:AL132966
EMBL:AY059136EMBL:AY088845EMBL:CP002686EnsemblPlants:AT3G53370
EnsemblPlants:AT3G53370.1entrez:824505ExpressionAtlas:P42551GeneID:824505
Genevisible:P42551GO:GO:0003677GO:GO:0005634GO:GO:0006351
GO:GO:0006355hmmpanther:PTHR35298HOGENOM:HOG000240777InParanoid:P42551
InterPro:IPR006779OMA:YVYAQKNPaxDb:P42551Pfam:P42551
Pfam:PF04689PIR:T45877PRO:PR:P42551Proteomes:UP000006548
RefSeq:NP_566985.1TAIR:AT3G53370TMHMM:TMhelixUniGene:At.20181
UniProt:P42551
Coordinates (TAIR10) chr3:-:19788159..19788737
Molecular Weight (calculated) 8213.38 Da
IEP (calculated) 10.61
GRAVY (calculated) -0.06
Length 76 amino acids
Sequence (TAIR10)
(BLAST)
1: MDGEDFAGKA AAEAKGLNPG LIVLLVVGGP LLVFLIANYV LYVYAQKNLP PRKKKPVSKK KLKREKLKQG VPVPGE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)